0:05 okay um ladies and gentlemen good day
0:09 all uh my name is M Ali from Department
0:13 of biochemistry a area and you are all
0:16 welcome to my YouTube channel and if
0:17 this is the first time you coming to my
0:22 YouTube Channel please subscribe so in
0:25 this video we are going to look at the
0:27 numerous factors that affect the enzymes
0:30 catalyze reaction so there are the
0:34 factors that affect the rat of
0:38 reaction and this factors include
0:40 substrate concentration enzymes
0:42 concentration product inhibition
0:50 Inhibitors
0:54 so let's start with the temperature so
0:57 generally an increase in temperature
1:00 increases the increase
1:04 the reaction or increase the kinetic
1:08 energy of the reacting particles or of the
1:09 the
1:12 reactants so as you increase the
1:15 temperature of the
1:18 reactant particles so
1:21 generally the kinetic energy of the
1:24 molecules of the reactant particles will
1:26 increase therefore thetion will be
1:29 increased between the reacting particles
1:31 let's say in this case you have
1:34 a as a
1:37 substrate react with
1:39 with
1:52 D so of course because we are thinking
1:55 about enzymes activi so there is an
1:58 enzyme cell which is e that converts
2:01 this two substrate a and into C and D so
2:03 what we are saying here is if you
2:06 increase the temperature of the reactant
2:09 system if you increase the temperature
2:12 of the reactant system the kinetic
2:16 energy that is the movement of the the
2:18 actom particles will increase it will
2:21 increase to elastic collusions so they
2:24 will be increase as the temperature
2:26 increase the kinetic energy will be
2:35 ction between particles and as a result
2:38 of that a sufficient amount of energy
2:41 will be provided in order for the
2:45 reacting particles to convert into the
2:49 product so generally the rate of this
2:53 reaction increases with an increase the
2:55 rate of reaction increase with an
2:57 increase in temperature due to increase
3:01 in equalution between the parles but of
3:03 course as you can see here this is an
3:06 optimal temperature Optimum temperature
3:09 it means is a temperature that is based
3:12 for the enzyme's activity to for the
3:15 enzyme's catalysis to occur so this is
3:20 the maximum or Optimum temperature and
3:22 of course from this optimal temperature
3:24 you realize that the rate of the
3:27 reaction is that or is decreasing the
3:31 rates of the reaction is is
3:35 decreasing from here to here so the
3:37 reason why the rate of the reaction is
3:40 decreasing because generally
3:43 enzymes operates at the threedimensional
3:48 structure that is in the tertiary andary
3:51 structure so as the increase in as the
3:54 temperature increases above the opal
3:58 temperature the Integrity of the active
4:02 side of this enzymes start D
4:05 stabilizing so that the substrate itself
4:06 cannot be
4:09 perfectly fits into the active side due
4:12 to the denaturation of the enzymes so
4:15 generally as the temperature increases
4:19 above the optimal temperature the
4:22 enzymes will be the natur and of course
4:24 once the enzymes is the nature it means
4:28 that the active sides of the enzymes
4:30 canot perfectly
4:31 bind to
4:35 the substance so as a result of that du
4:38 to the maturation of the Integrity or of
4:40 the threedimensional structure of the
4:43 enzymes the activity or the rate of the
4:45 reaction will decreases so generally
4:48 from let's say from zero as you are
4:50 increasing let's say from zero as you
4:52 are increasing the temperature as you
4:55 are increasing the temperature as you
4:56 increasing the temperature of the
4:59 reacting system the reaction or the rate
5:02 the reaction increases as we can see
5:06 here clearly but when the temperature
5:08 Optimum that is the optimum temperature
5:11 that is the temperature that is
5:13 maximally utilized by the enzymes to
5:16 conver Subs to product so at it
5:19 increases Above This C temperature of
5:22 course the protein structure will or the
5:25 enzyme structure will tend to be theat
5:26 so as a result of that
5:28 denaturation the active side of the
5:30 enzymes will not
5:33 are complementary to the substrate so
5:35 therefore the rate of the reaction will
5:38 start decreasing of to a zero point
5:43 where the enzymes cannot catalyze any
5:45 form of
5:47 reaction and of course and that is for
5:50 the temperature and then the next after
5:54 temperature then we have pH pH also we
5:58 have optimum pH so generally the rates
6:00 of the reaction is increases with an
6:03 increase in PH although it depend on the
6:06 types of the enzymes there are enzymes that
6:08 that
6:10 work based at acidic
6:15 pH and there are enzymes that work based
6:17 at basic
6:22 pH so if you have such conditions so
6:25 generally as you are increasing the pH
6:27 as you are increasing the pH the rate of
6:33 the reaction also tend to increase
6:37 so as the rate of the reaction increases
6:39 with an increase in
6:45 PH op pH where enzymes
6:53 work best so if higher or lower hydrogen
6:58 ion that is in acids or o in alkaline
7:02 base can in spere can interfere enzyme
7:05 structure so it depend on the
7:09 concentration of the so is depend on the
7:13 ph and the types of the enzym some
7:16 enzymes work based at acidic pH while
7:19 some enzymes work based at an alkaline
7:23 pH that is above s point and some below
7:26 zero and some of course work at a
7:29 neutral pH so generally an increase in
7:33 pH for example if it is
7:36 uh alkaline if it is alkaline of course
7:41 the pH of an alkaly is generally about
7:46 seven so when the pH of an alkaline
7:49 medium where the enzymes work start
7:51 decreasing it means that it will be
7:55 changing from an alkaline environment
7:57 going back to the acidic environment so
8:00 as a result of that the
8:03 pH can interfere with the enzyme
8:07 structure and of course if it is if if
8:11 the enzymes work at an at an acidic pH
8:15 and it now increases
8:18 from acidic to
8:21 phasic so it means that the structure of
8:23 the enzy should also be aced so as a
8:27 result of that the activity of the
8:30 enzymes will be decreased
8:33 so that's what happened so as the pH
8:37 increases as the pH increases or
8:39 decreases that leads to interfere with
8:43 the enzyme structure and it affects the
8:46 activity of the enzymes so but generally
8:48 as you increase the pH the activity of
8:52 the enzymes increase up to it is optimum
8:54 pH but
8:58 as the optimum pH
9:02 is random that or is surender whether by
9:04 decreasing or
9:07 increasing which leads to interference
9:09 of the enzy structure then the activity
9:12 will decrease and then the next thing is
9:15 enzymes concentration so as you increase
9:17 the concentration that is the amount of
9:20 the enzymes you are also increasing the
9:22 rate of the reaction so generally an
9:25 increase in enzymes concentration leads
9:29 to increase in the rate of the reaction
9:31 because as you are increasing the
9:33 concentration of the enzymes it means
9:36 that you it means that at the same time
9:39 you increasing the amount of The Binding
9:41 sites for the substrate that is the
9:43 amount of the active sites are also
9:47 increasing so that more of the substrate
9:50 can be bed and converted to product so
9:53 we have a steady state if a substrat
9:55 available so
9:58 generally generally as if you can now
10:01 see this from here to here it tells us
10:04 that as you increase the concentration
10:06 of the enzymes and of course the rate of
10:08 the reaction will increase so that
10:11 because there are more active side of
10:13 the enzymes that are available for
10:15 binding with the
10:19 substrat but if the substrate is limited
10:21 that when it means when say the
10:24 substrate is limited that means that
10:28 it's a situation where you have more of
10:31 the active SES then the substrates and
10:35 all the substrate are now bind to the
10:38 active SES for the
10:42 catalysis and no more other three
10:45 substrate and of course the rate of
10:48 theaction will start declining it will
10:51 start declining so it means that for the
10:55 reactions to proceed simultaneously
10:58 without supp to increase continuously it
11:00 means that both the concentration of the
11:02 enzymes on the substrate must be
11:05 increased at the same time and then the
11:09 next thing is substrate concentration so
11:12 substrate concentration also increase
11:14 rate of di action so it means that the
11:21 reaction the more the substrate will
11:24 balance to the active side of the
11:27 enzymes and of course the rate of the
11:29 reaction that the speed of the reaction
11:31 will also
11:35 increase but if you now reach to a
11:39 point where all the enzymes or all the
11:41 active side of the enzymes are used
11:48 of the some substra remain three that
11:52 there is no available active SES BS so
11:55 it means that it will now reach to a
11:58 saturation state that is where we have
11:59 this parabolic
12:02 shap graph so you see here as you
12:04 increase the subate concentration the
12:08 rate of theaction increases but if all
12:11 the active side of the enzymes available
12:13 is being saturated with the substrates
12:18 so what will happen to narate a platin
12:22 where there is no increase or decrease
12:26 of the action but at the starting point it
12:27 it
12:29 increases but when it reach this it
12:32 means that all the active side of the
12:36 enzymes is being filled off with the
12:41 substrate that is where we have
12:45 maximum velocity this is where we have
12:48 maximum velocity that is V Max it means
12:52 that the enzymes reach it is V
12:57 Max so that is actually for
13:00 the for this part with these four
13:02 factors temperature increases the rate
13:05 of the reaction but further increase
13:08 will Le to the nature of the enzymes and
13:12 also uh enzymes have optimum pH
13:16 depending on the types of the enzymes
13:17 and the
13:20 medium that the enzymes require so if an
13:24 increase or change in the pH alter will
13:26 interfere with the en structure and of
13:30 course the activity of the enzymes will
13:33 be decreased and of course generally an
13:37 increase in PH leads to increase
13:41 in enzymes reaction which is thereby
13:43 increasing the rate of the reaction
13:45 reaction
13:47 so this is
13:51 for enzyme for the four factors that are
13:54 affecting the rate of the reaction so
13:57 now the next thing that we are going to
14:01 look at is of course the effect of the
14:03 substrate concentration as you said so
14:07 the Shi of the C that relate activity to
14:10 substrate concentration is hyperbolic so
14:12 this is hyperbolic shell and of course
14:15 this is the first order reaction this is
14:17 the F order reaction it means that an
14:21 increase in the substrates have effects
14:24 on the increase in the concentration so
14:27 have effects on the increase in the rate
14:30 of dition so we have f order so from
14:33 here to here from here to here we have
14:37 first order it means that an increase in
14:39 the rate of the reaction is depend on
14:42 the increase in the concentration of the
14:45 substrate that is the reactant and of
14:48 course this is a zero order reaction you
14:50 said zero order reaction it means that
14:54 at this point the rate of the reaction
14:57 doesn't have any effect it doesn't have
15:00 any effect on on the rate of the
15:03 reaction because all the substrate is
15:07 been is occupied who have occupied the
15:09 active side of the enzyme so that is why
15:11 it's zero order so the r of the reaction
15:14 is independent on the concentration of the
15:25 so so like for example here if you can
15:31 look at at point A and B this is point a
15:33 this is our point
15:37 a and this is our Point P so if you can
15:41 see point A to B there's an increase or
15:43 decreasing substrat there is an
15:46 increasing or decreasing concentration
15:49 of the subsrate
15:52 thereby will increase or decrease the
15:55 number of enzyme substrate complex with
15:59 a corresponding change in velocity that
16:01 initial velocity so the rate of the
16:04 reaction is subrate dependent which is
16:08 first over reaction then at Point C at Point
16:09 Point
16:14 C essentially all the enzymes is present
16:18 at the enzyme substrate complex
16:22 stage means that the the enzymes and
16:29 being formed together and there is no
16:33 any free enzymes no any free enzymes so
16:36 it means that all the enzymes at Point C
16:39 is present at enzyme subrate complex
16:42 since no free enzymes remains available
16:45 for forming enzy substrate complex the
16:47 further increase in substrate
16:49 concentration cannot increase the rate
16:52 of the reaction so reaction rate
16:55 therefore becomes independent of
16:58 substrate concentration and that is zero reaction
17:00 reaction
17:03 so the zero order reaction it's point
17:11 enzymes is completely filled with the
17:13 substrate and increasing the
17:15 concentration of the substrate doesn't
17:27 so so we have km and it is significant
17:31 so my constant which is KM my cening
17:36 constant km is the is the substrate at
17:40 which the initial velocity half or is
17:43 half the maximum velocity of course we
17:45 know that as I
17:49 said when the enzymes is completely
17:51 filled with the substrates and at that
17:53 point you have all the enzymes at a
17:58 stage of enzyme substrate complex so at
18:02 that stage it means that you have V Max
18:06 we have V
18:09 Max that stage we have B
18:17 maass so as I was seeing it means that
18:22 the when you have
18:24 enzymes and you have
18:28 enzymes you have enzymes subrate complex
18:31 mean means that there is no free enzymes
18:35 at this stch it means no means no free
18:40 enzymes no free enzym so all the enzymes
18:44 at this stage is being utilized for the
18:47 formation of En substrate complex
18:51 therefore it means that the enzymes is
18:56 at is at it is V Max it is at it is
18:59 maximum velocity and of course there's a
19:03 relationship between km and Vmax there's
19:06 a relationship between km and Vmax and
19:10 the relationship is that km is equal to
19:16 half V Max so km is half b
19:21 max so it means that when you have your
19:23 enzymes starting from here then it now reach
19:24 reach
19:27 to this platin Stitch where all the enzymes
19:29 enzymes
19:32 and the substrate form enzyme substrate
19:35 complex so no free enzymes so it means
19:37 that the rate of the
19:41 reaction reach it is V Max that is it is maximum
19:42 maximum
19:45 velocity and the relationship between km
19:51 and V Max is half Max so T the km has
19:54 the dimension of substrate concentration
19:57 so it is specific and constant so this
20:01 km specific and it is constant for a
20:03 given enzymes under defin conditions of
20:07 time temperature and pH so there are
20:09 enzymes because we have different
20:14 enzymes we can have glinus and
20:16 hexus they are although they are
20:19 isozymes they are enzyme that catalyze
20:21 the same substrates but they have different
20:22 different km
20:24 km
20:27 under fine conditions of time
20:30 temperature and pH H so even within
20:33 isozymes you can have isozymes with
20:36 different values and of course the
20:38 enzymes that catalyze different types of
20:43 theaction have different km value and
20:45 this km values determine the Affinity of
20:49 enzymes for its substrate and the laser
20:52 the km for the
20:56 affinity for yeah so it means that what
21:00 this means is that the k is used to
21:02 determine the Affinity of the enzymes
21:05 toward it is substrate and the lower the
21:07 km the lower the km the higher the
21:10 Affinity of the enzymes it means that if
21:14 you now have enzymes a and enzymes [Music]
21:16 [Music]
21:22 B enzymes a and enzymes B and enzymes a
21:24 have low
21:29 km while enzymes B have
21:32 higher km so what does that means it
21:37 means that the enzymes with lower km
21:40 have Affinity or have the ability to
21:43 bind the substrate more more than the
21:47 one with the higher km value so km value
21:49 it helps in determining the true
21:53 substrate for the enzymes so you can use
21:55 this km value to
21:57 determine the best substrate for a particular
21:59 particular
22:04 enzymes so that is for the km value and
22:07 it is significant so you can use it in
22:18 Discovery by knowing the key for a
22:20 particular Inhibitors it will give us an
22:25 idea whether the drugs will be the
22:28 goods or the targets of a particular
22:36 Interest so now the next the the the
22:37 next factors that affect the rate of
22:40 reaction is the effect is the effect of product
22:41 product
22:44 concentration so generally in a
22:47 particular partway in a given partway in
22:49 a given
22:51 partway like for
22:55 example uh the products of a particular
23:03 of the starting
23:06 enzymes of that particular part like for
23:08 example this is a
23:11 pathway the first enzyme is enzymes one
23:13 so we have enzymes 2 enzymes three and
23:15 we have the
23:19 product so but in this case the product
23:22 of this reaction now
23:25 inhibites the face enzymes of that
23:28 reaction and the process of this is
23:32 called feedback inhibition like for
23:34 example generally like in glycolysis we
23:39 have what you call glycolysis so in
23:42 glycolysis we have
23:45 glucose and the glucose is converted
23:49 through a series of like about 10
23:55 reactions a phyit is generated your f f
23:58 bits is generated
24:02 and of course the F the first enzymes
24:07 for glycolysis is hexo Kus so if the
24:10 fire which is the end product of
24:13 glycolysis is
24:16 accumulated or is produced in high
24:20 amount so this products will now go back
24:23 and inhibit the face enzymes of this
24:26 pathway that is the face enzymes of
24:29 glycolysis so this type of inhibition is
24:33 called feedback it's called feedback
24:36 inhibition so when the enzymes of a
24:39 particular pathway is inhibited by the
24:42 product or by the final product of that
24:44 pathway so the process of this
24:47 inhibition is called feedback inhibition
24:50 so under certain conditions the reverse
24:54 reaction may be favored foring back the
24:57 substrate so that is why whenever you
24:59 have this kind of inhib that is feedback
25:01 inhibition like in glycolysis so it
25:04 means that the back reaction that is the
25:06 r reaction will be favored that is
25:08 whenever you have feedback inhibition in
25:11 glycolysis so it means that there will
25:14 be glucogenesis
25:18 gluc neo
25:20 genesis so we said gluc neogenesis it
25:25 means gluco means glucose gluco means
25:30 glucose and then Neo means means new
25:35 means new and Genesis of course is
25:37 synthesis is
25:40 synthis so it means that in the feedback
25:43 inhibition here glucose produce fyro and
25:45 the fet is accumulated and it now
25:46 inhibit the enzyme so it means that the
25:50 substrate here which is pyro will now go
25:52 back and synthesize glucose so the
25:55 process of doing that is called
25:57 gluconeogenesis and that is a typical
26:04 inhibition so the next time is the
26:07 effect of activators and coenzymes so
26:09 the activity of certain enzymes is
26:14 greatly dependent on metal uh activators
26:17 and coenzymes so vitamins most of the
26:19 vitamins they act as coenzymes in a
26:22 variety of reactions so like for example
26:26 from the previous um from the
26:29 previous we talk about
26:32 glycolysis so like for example in this
26:34 glycolysis the first reaction in
26:40 glycolysis is the conversion of glucose to
26:48 glucose six phosphates glucose six
26:52 phosphates and of course in this
26:56 reaction enzymes called hexin is repair
27:00 and ATP ATP is
27:03 utilized and glucose 6 phosphate and
27:08 ATP are generated are generated but this
27:12 enzy exocin require a
27:16 coraor requ a metal ions it requires a
27:19 metal ions magnesium ion magnesium
27:23 2+ so this is an example of co-actors
27:25 that is
27:30 require to make this exocin active for
27:34 it to conver glucose glucoses posate the
27:37 process of doing this is the effect of
27:40 activators and the core enzymes and of
27:48 reactions and of course these types of
27:51 reaction is the types of reaction that
27:54 have effect on both the activators and
27:59 the co enzymes and uh for that
28:01 we can have some reaction that require
28:04 Co enzymes like for example we have an
28:06 enzym called glycer three phosphate
28:10 dehydrogen in glycolysis it require Co
28:17 enzyme and the co enzyme is n e n plus
28:20 n nucleo
28:23 Nite nucleo so this is the examples of
28:27 the co enzymes that is require for these
28:29 types of reaction so they are very
28:32 essential they affect the they are
28:34 factors that affect the rate of the
28:36 reaction and if there is no this Co
28:38 factors and coenzymes the reaction may
28:46 occur so now the next thing is the
28:49 effect of modulators and Inhibitors so
28:51 enzymes activity is generally reduced in
28:52 the France of an
28:55 inhibitor and when you said Inhibitors
28:57 it means that there are the molecules
29:00 that usually bind to the enzymes and the
29:02 bend would increase the activity of the
29:05 enzymes so generally
29:08 as there is an increase if there is an
29:11 increase in inhibitor there will be
29:13 decreasing enzy activity and there's
29:17 also modifier that is positive modifiers
29:19 which are call activators so what they
29:23 do what they do they increase the rate
29:26 of the reaction they increase the rate
29:28 of the reaction so Inhibitors and activ
29:31 so positive moders positive
29:34 modifier activators so they generally
29:37 increase the rate of theaction and then
29:39 the next thing is effect of time so the
29:42 longer an enzyme is incubated with it is
29:43 substrate the greater the amount of the
29:46 product that will be formed however rate
29:48 of formation of product is not a simple
29:52 linear functions of a time of incubation
29:56 so o protein Su nitration and H loss of
29:58 catalytic activities with time
30:01 so time is important but the incubation
30:04 time is important because there are some
30:08 points that when you allow your reacting
30:10 system to stay
30:12 long maybe with an increase in
30:15 temperature that is likelihood that the
30:18 proteins will suffer the ntion and once
30:21 that happen it means that there will be no
30:23 no
30:26 activity this is an example of enzymes
30:29 catalyzed reaction on the completion in
30:32 an Optimum time so you look at it as an
30:34 Optimum time so if you can now clearly
30:37 see this you can see that with the time
30:39 with the time it's time with an increase
30:41 in time there is an increase in product
30:44 formation but you see at this point it
30:46 start going down so that is it means
30:48 that if you now allow it to continue
30:51 like this then it will affect the
30:54 reaction so variations of time affect
30:57 the rates of enzymes catalyze reactions
30:58 so ladies and Gent
31:02 this is the end of The Today class which
31:05 is the factors that affects the rate of
31:07 the chemical reaction and if this is the
31:09 first time you are coming to my YouTube
31:11 Channel Please Subscribe for more video